Variant report

Variant	rs10044393
Chromosome Location	chr5:35754695-35754696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10037564	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10043724	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap]
rs10043734	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10941258	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs10941260	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11957963	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12697350	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2201410	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[EUR][1000 genomes]
rs4869462	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869464	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4869623	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62353695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6451213	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6451217	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6451218	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6875940	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs6891098	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs716971	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7443063	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7447153	0.81[CHB][hapmap]
rs7705904	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7710255	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35753400-35755000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr5:35753400-35755200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:35753600-35754800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr5:35753600-35755400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
5	chr5:35753800-35754800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:35753800-35755000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr5:35753800-35755000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr5:35753800-35755200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr5:35753800-35755200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr5:35753800-35755400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:35754000-35754800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:35754400-35754800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:35754600-35754800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr5:35754600-35755000	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links