Variant report

Variant	rs10050982
Chromosome Location	chr5:35713695-35713696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10037597	0.83[AMR][1000 genomes]
rs10037620	0.82[AMR][1000 genomes]
rs10039940	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10043180	0.82[AMR][1000 genomes]
rs10043224	0.82[AMR][1000 genomes]
rs10057421	0.83[AMR][1000 genomes]
rs10064741	0.80[AFR][1000 genomes]
rs10066047	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10066144	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10066293	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10070465	0.83[AMR][1000 genomes]
rs10072009	0.83[AMR][1000 genomes]
rs10072048	0.83[AMR][1000 genomes]
rs10073537	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10078803	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10079528	0.80[AFR][1000 genomes]
rs10941259	0.83[AMR][1000 genomes]
rs12515119	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12697346	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12697347	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12697348	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13153801	0.82[ASN][1000 genomes]
rs13153802	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13153876	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13153894	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13153955	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13154215	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13170082	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13170390	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13186771	0.86[ASN][1000 genomes]
rs13356541	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6451208	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6451209	0.82[AMR][1000 genomes]
rs6451211	0.82[AMR][1000 genomes]
rs66496382	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6869545	0.83[AMR][1000 genomes]
rs6870755	0.82[AMR][1000 genomes]
rs6871358	0.82[AMR][1000 genomes]
rs6875846	0.82[AMR][1000 genomes]
rs6887970	0.83[AMR][1000 genomes]
rs6893432	0.83[AMR][1000 genomes]
rs6893470	0.83[AMR][1000 genomes]
rs7444550	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7447772	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7705347	0.82[AMR][1000 genomes]
rs7705633	0.83[AMR][1000 genomes]
rs7705851	0.80[AMR][1000 genomes]
rs7706122	0.82[AMR][1000 genomes]
rs7725060	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7727052	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7727246	0.83[AMR][1000 genomes]
rs7729774	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv1838423	chr5:35712580-35713777	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv11960	chr5:35713141-35714352	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3449370	chr5:35713145-35715193	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
3	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links