Variant report

Variant	rs10079528
Chromosome Location	chr5:35707861-35707862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10037597	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10037620	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10039940	0.93[AFR][1000 genomes]
rs10042632	0.81[CEU][hapmap]
rs10043180	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10043224	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10050982	0.80[AFR][1000 genomes]
rs10057421	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10060167	0.81[CEU][hapmap]
rs10064741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10066047	0.82[AFR][1000 genomes]
rs10066144	0.84[AFR][1000 genomes]
rs10066293	0.92[AFR][1000 genomes]
rs10067949	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10069995	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10070465	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10070515	0.81[CEU][hapmap]
rs10072009	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10072048	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs10073537	0.93[AFR][1000 genomes]
rs10078803	0.93[AFR][1000 genomes]
rs10941257	0.83[AFR][1000 genomes]
rs10941259	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs11748763	0.81[CEU][hapmap]
rs12172997	0.80[CEU][hapmap]
rs12515119	0.92[YRI][hapmap];0.96[AFR][1000 genomes]
rs12697346	0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs12697347	0.93[AFR][1000 genomes]
rs12697348	0.93[AFR][1000 genomes]
rs13153802	0.88[AFR][1000 genomes]
rs13153876	0.93[AFR][1000 genomes]
rs13153894	0.93[AFR][1000 genomes]
rs13153955	0.93[AFR][1000 genomes]
rs13154215	0.92[AFR][1000 genomes]
rs13170082	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs13170390	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs13177154	0.81[CEU][hapmap]
rs13356541	0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs16902409	0.96[CEU][hapmap];0.84[CHB][hapmap];0.87[EUR][1000 genomes]
rs16902418	0.92[EUR][1000 genomes]
rs6414876	0.81[CEU][hapmap]
rs6451205	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6451206	0.81[CEU][hapmap]
rs66496382	0.93[AFR][1000 genomes]
rs6869545	0.85[AFR][1000 genomes]
rs6870156	0.92[YRI][hapmap]
rs6870755	0.89[YRI][hapmap]
rs6874194	0.81[CEU][hapmap]
rs6878388	0.84[CEU][hapmap]
rs6887970	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs6893432	0.85[AFR][1000 genomes]
rs6893470	0.85[AFR][1000 genomes]
rs6897434	0.81[CEU][hapmap]
rs6898356	0.81[CEU][hapmap]
rs72738827	0.92[EUR][1000 genomes]
rs7444550	0.95[AFR][1000 genomes]
rs7447772	0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs7448971	0.81[CEU][hapmap]
rs7705633	0.89[YRI][hapmap]
rs7705851	0.89[YRI][hapmap]
rs7713174	0.82[CEU][hapmap]
rs7719314	0.81[CEU][hapmap]
rs7719458	0.81[CEU][hapmap]
rs7725060	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs7727052	0.84[AFR][1000 genomes]
rs7727246	0.85[AFR][1000 genomes]
rs7729774	0.95[AFR][1000 genomes]
rs7733039	0.81[CEU][hapmap]
rs9292599	0.81[CEU][hapmap]
rs9292600	0.84[CEU][hapmap]
rs9292601	0.81[CEU][hapmap]
rs9292604	0.88[CEU][hapmap]
rs9292605	0.81[CEU][hapmap]
rs9292607	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35672000-35708600	Weak transcription	Gastric	stomach
2	chr5:35684600-35708600	Weak transcription	Fetal Kidney	kidney
3	chr5:35686200-35709600	Weak transcription	Fetal Lung	lung
4	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
5	chr5:35695000-35711000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:35697000-35710600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
8	chr5:35697200-35708200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:35697200-35709600	Weak transcription	Right Ventricle	heart
10	chr5:35697600-35709000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:35697600-35709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:35699000-35711200	Weak transcription	Ovary	ovary
13	chr5:35699000-35711600	Weak transcription	Lung	lung
14	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:35702400-35709800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:35706400-35711000	Weak transcription	Brain Substantia Nigra	brain
17	chr5:35706800-35708800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:35707600-35708000	Enhancers	Primary T cells from cord blood	blood
19	chr5:35707600-35708000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr5:35707800-35708000	Strong transcription	Pancreas	Pancrea
21	chr5:35707800-35708000	Enhancers	Thymus	Thymus

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