Variant report

Variant	rs10067949
Chromosome Location	chr5:35705098-35705099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10042632	0.81[CEU][hapmap]
rs10060167	0.81[CEU][hapmap]
rs10064741	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10069995	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10070515	0.81[CEU][hapmap]
rs10079528	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11748763	0.81[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11958367	0.85[AFR][1000 genomes]
rs12172997	0.81[CEU][hapmap]
rs13177154	0.82[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16902409	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16902418	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34682820	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6414876	0.81[CEU][hapmap]
rs6451205	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6451206	0.81[CEU][hapmap]
rs6874194	0.81[CEU][hapmap]
rs6878388	0.84[CEU][hapmap]
rs6897434	0.81[CEU][hapmap]
rs6898356	0.82[CEU][hapmap]
rs72738827	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7448971	0.81[CEU][hapmap]
rs7713174	0.82[CEU][hapmap]
rs7719314	0.81[CEU][hapmap]
rs7719458	0.81[CEU][hapmap]
rs7733039	0.81[CEU][hapmap]
rs9292599	0.81[CEU][hapmap]
rs9292600	0.84[CEU][hapmap]
rs9292601	0.81[CEU][hapmap]
rs9292604	0.88[CEU][hapmap]
rs9292605	0.81[CEU][hapmap]
rs9292607	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
2	chr5:35672000-35708600	Weak transcription	Gastric	stomach
3	chr5:35681000-35707600	Weak transcription	Primary T cells from cord blood	blood
4	chr5:35684600-35708600	Weak transcription	Fetal Kidney	kidney
5	chr5:35686200-35709600	Weak transcription	Fetal Lung	lung
6	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
7	chr5:35695000-35711000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:35697000-35710600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
10	chr5:35697200-35708200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:35697200-35709600	Weak transcription	Right Ventricle	heart
12	chr5:35697600-35709000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:35697600-35709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:35699000-35711200	Weak transcription	Ovary	ovary
15	chr5:35699000-35711600	Weak transcription	Lung	lung
16	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:35700400-35707800	Weak transcription	Thymus	Thymus
18	chr5:35702400-35709800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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