Variant report

Variant	rs34682820
Chromosome Location	chr5:35674769-35674770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35673549..35675188-chr5:35678756..35681423,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10067949	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10069995	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11748763	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13177154	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16902409	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16902418	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6451205	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71617727	0.85[ASN][1000 genomes]
rs72738827	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
2	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
3	chr5:35665600-35677800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:35668600-35675000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:35668600-35675800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:35669000-35675000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr5:35669200-35674800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:35669200-35675000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr5:35670200-35675000	Enhancers	Dnd41	blood
10	chr5:35670400-35678800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:35672000-35675000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:35672000-35708600	Weak transcription	Gastric	stomach
13	chr5:35672200-35674800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:35673400-35678400	Weak transcription	Lung	lung
15	chr5:35673600-35675200	Enhancers	Primary T cells from cord blood	blood
16	chr5:35673600-35675200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr5:35673600-35675400	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:35673600-35693400	Weak transcription	Brain Anterior Caudate	brain
19	chr5:35673600-35694600	Weak transcription	Brain Angular Gyrus	brain
20	chr5:35673800-35675600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr5:35673800-35675600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr5:35673800-35677400	Weak transcription	Fetal Heart	heart
23	chr5:35673800-35679200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:35674000-35675000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr5:35674200-35675000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:35674200-35675000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:35674200-35677600	Weak transcription	Primary B cells from cord blood	blood
28	chr5:35674200-35678600	Weak transcription	Fetal Thymus	thymus
29	chr5:35674400-35679200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:35674600-35675400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:35674600-35677200	Weak transcription	Primary hematopoietic stem cells	blood

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