Variant report

Variant	rs6889260
Chromosome Location	chr5:35769510-35769511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10941259	0.86[CHB][hapmap]
rs11741496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11749262	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13186771	0.80[CEU][hapmap]
rs1389829	0.93[CHB][hapmap]
rs3822736	0.86[CHB][hapmap]
rs4869476	0.93[CHB][hapmap]
rs4869618	0.93[CHB][hapmap]
rs56322028	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6883204	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6895099	0.90[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35766000-35770000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35766400-35770600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:35766600-35770600	Weak transcription	Osteobl	bone
4	chr5:35767000-35770600	Weak transcription	Hela-S3	cervix
5	chr5:35768200-35770000	Enhancers	Brain Germinal Matrix	brain
6	chr5:35769400-35770000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:35769400-35772000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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