Variant report

Variant	rs4869476
Chromosome Location	chr5:35784026-35784027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10037620	0.81[CEU][hapmap]
rs10042935	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10070465	0.81[CEU][hapmap]
rs10941262	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11741496	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186771	0.89[CEU][hapmap]
rs13356541	0.86[CEU][hapmap]
rs1389829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3822736	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56163473	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56322028	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345129	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57276516	0.90[ASN][1000 genomes]
rs61681692	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6883204	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6889260	0.93[CHB][hapmap]
rs6895099	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs72738869	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72738870	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35778000-35787800	Enhancers	Dnd41	blood
2	chr5:35778800-35784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:35781000-35784600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:35781800-35788000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:35782000-35787800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:35782200-35784400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:35782200-35784400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:35782200-35784600	Weak transcription	Fetal Thymus	thymus
9	chr5:35782200-35789000	Weak transcription	NHDF-Ad	bronchial
10	chr5:35782400-35784200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:35782400-35784400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:35782400-35784800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:35782400-35786000	Weak transcription	Thymus	Thymus
14	chr5:35782400-35786400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:35782400-35786600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:35782400-35786600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr5:35782400-35788000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:35782400-35788800	Weak transcription	NHLF	lung
19	chr5:35782600-35784800	Weak transcription	Osteobl	bone
20	chr5:35782600-35789800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:35782800-35787800	Enhancers	Primary T cells from cord blood	blood
22	chr5:35783000-35784800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:35783400-35784400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr5:35783400-35789600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:35783800-35784200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr5:35783800-35784200	Enhancers	HSMM	muscle

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