Variant report
Variant | rs10040569 |
---|---|
Chromosome Location | chr5:57907642-57907643 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10055649 | 0.81[JPT][hapmap] |
rs10077599 | 0.81[JPT][hapmap] |
rs10078211 | 0.81[JPT][hapmap] |
rs10079823 | 0.82[JPT][hapmap] |
rs10471459 | 0.82[JPT][hapmap] |
rs10472068 | 0.82[JPT][hapmap] |
rs10472069 | 0.81[JPT][hapmap] |
rs10472070 | 0.81[JPT][hapmap] |
rs10514876 | 0.82[JPT][hapmap] |
rs12152774 | 0.82[JPT][hapmap] |
rs12153291 | 0.82[JPT][hapmap] |
rs17280328 | 0.81[JPT][hapmap] |
rs17282012 | 0.82[JPT][hapmap] |
rs17348080 | 0.82[JPT][hapmap] |
rs2279981 | 0.82[JPT][hapmap] |
rs6861930 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs6877247 | 0.81[JPT][hapmap] |
rs9283719 | 0.81[JPT][hapmap] |
rs9292171 | 0.82[JPT][hapmap] |
rs9292173 | 0.81[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2830363 | chr5:57893949-58555491 | Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv1029145 | chr5:57905821-58141221 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |