Variant report

Variant	rs2279981
Chromosome Location	chr5:57913192-57913193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10040569	0.82[JPT][hapmap]
rs10055378	0.89[ASN][1000 genomes]
rs10055388	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10055649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10058168	0.85[ASN][1000 genomes]
rs10060872	0.89[ASN][1000 genomes]
rs10077599	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10078211	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10079823	0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10471459	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10472068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10472069	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10472070	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10514876	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10514877	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12152774	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12153291	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13358097	1.00[ASN][1000 genomes]
rs13436622	0.89[ASN][1000 genomes]
rs17280328	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17282012	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17348080	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1876690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2194037	0.89[ASN][1000 genomes]
rs35694320	0.85[ASN][1000 genomes]
rs5011219	1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs6877247	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs72760270	1.00[ASN][1000 genomes]
rs72760285	0.89[ASN][1000 genomes]
rs72760294	0.85[ASN][1000 genomes]
rs753219	0.89[ASN][1000 genomes]
rs753220	0.89[ASN][1000 genomes]
rs9283719	0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9292171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9292173	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57912600-57913400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:57912600-57913400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57913000-57913600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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