Variant report

Variant	rs10040675
Chromosome Location	chr5:98382640-98382641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98264902..98266916-chr5:98381565..98384690,3	K562	blood:
2	chr5:98247883..98250755-chr5:98381007..98383241,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10039507	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10041263	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10041335	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10054523	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10055595	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10056842	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10056918	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10061406	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs10062455	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10064594	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10065808	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10067635	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10067866	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10068003	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10068917	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10077697	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085106	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085145	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10479350	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10479351	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10479352	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10479353	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10479354	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11948998	0.90[CEU][hapmap]
rs11953096	0.90[CEU][hapmap]
rs11958835	0.90[CEU][hapmap]
rs12332280	0.96[EUR][1000 genomes]
rs12332340	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12332364	0.93[EUR][1000 genomes]
rs12332383	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs161742	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs17166414	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs17166423	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs17166428	0.89[CEU][hapmap]
rs17166439	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs17166455	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs17166484	0.91[EUR][1000 genomes]
rs17166575	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17166578	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2164986	0.85[EUR][1000 genomes]
rs28555343	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28656032	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2963709	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs327810	0.81[EUR][1000 genomes]
rs36011435	0.85[EUR][1000 genomes]
rs44070	0.93[EUR][1000 genomes]
rs55780476	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55821667	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55854720	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56086412	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56096102	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56115002	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56153113	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56159022	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56160758	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56246849	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331947	0.91[EUR][1000 genomes]
rs56400831	0.85[EUR][1000 genomes]
rs58479016	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58771325	0.89[EUR][1000 genomes]
rs6596659	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6866629	0.90[CEU][hapmap]
rs6867271	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883467	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6890358	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6895358	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs727637	0.89[CEU][hapmap]
rs7708436	0.91[EUR][1000 genomes]
rs7719375	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7737402	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9327950	0.96[EUR][1000 genomes]
rs9327954	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9327955	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98380800-98383600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98381200-98382800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:98381400-98386800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:98381600-98395800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr5:98381800-98386200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:98382400-98390800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:98382600-98383000	Enhancers	Stomach Mucosa	stomach
8	chr5:98382600-98389400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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