Variant report

Variant	rs58771325
Chromosome Location	chr5:98324034-98324035
allele	-/CAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98261777..98266971-chr5:98317922..98324645,8	K562	blood:
2	chr5:98320467..98322089-chr5:98322877..98325395,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248489	Chromatin interaction
ENSG00000153922	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10039507	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10040675	0.89[EUR][1000 genomes]
rs10041263	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10041335	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10054523	0.89[EUR][1000 genomes]
rs10055595	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10056842	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10056918	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10061406	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10062455	0.89[EUR][1000 genomes]
rs10064594	0.91[EUR][1000 genomes]
rs10065808	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10067635	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10067866	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10068003	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10068917	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10077697	0.89[EUR][1000 genomes]
rs10085106	0.89[EUR][1000 genomes]
rs10085145	0.89[EUR][1000 genomes]
rs10479350	0.85[EUR][1000 genomes]
rs10479351	0.89[EUR][1000 genomes]
rs10479352	0.89[EUR][1000 genomes]
rs10479353	0.85[EUR][1000 genomes]
rs10479354	0.83[EUR][1000 genomes]
rs12332280	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12332340	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12332364	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12332383	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs161742	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17166414	0.83[EUR][1000 genomes]
rs17166423	0.83[EUR][1000 genomes]
rs17166439	0.83[EUR][1000 genomes]
rs17166455	0.85[EUR][1000 genomes]
rs17166484	0.89[EUR][1000 genomes]
rs17166575	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17166578	0.89[EUR][1000 genomes]
rs2164986	0.83[EUR][1000 genomes]
rs28555343	0.89[EUR][1000 genomes]
rs28656032	0.89[EUR][1000 genomes]
rs2963709	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36011435	0.83[EUR][1000 genomes]
rs44070	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55780476	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55821667	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55854720	0.91[EUR][1000 genomes]
rs56086412	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56096102	0.91[EUR][1000 genomes]
rs56115002	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56153113	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56159022	0.91[EUR][1000 genomes]
rs56160758	0.94[EUR][1000 genomes]
rs56246849	0.89[EUR][1000 genomes]
rs56331947	0.89[EUR][1000 genomes]
rs56400831	0.83[EUR][1000 genomes]
rs58479016	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6596659	0.89[EUR][1000 genomes]
rs6867271	0.89[EUR][1000 genomes]
rs6883467	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6890358	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6895358	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7708436	0.89[EUR][1000 genomes]
rs7719375	0.89[EUR][1000 genomes]
rs7737402	0.91[EUR][1000 genomes]
rs9327950	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9327954	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9327955	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826071	chr5:98312447-98358852	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1827754	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1837772	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1838335	chr5:98312447-98358852	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1845131	chr5:98312447-98358852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv4930	chr5:98318768-98350644	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98322600-98324400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:98322800-98324800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:98322800-98324800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:98322800-98324800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:98322800-98329200	Weak transcription	K562	blood

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