Variant report

Variant	rs10041189
Chromosome Location	chr5:96696964-96696965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:41398650..41400853-chr5:96695801..96698804,5	K562	blood:
2	chr5:96695823..96698804-chr6:142366314..142367822,2	K562	blood:
3	chr17:41463734..41465366-chr5:96695802..96697324,2	MCF-7	breast:
4	chr17:41462273..41467084-chr5:96695804..96698803,5	K562	blood:
5	chr17:41398605..41400432-chr5:96695803..96698802,4	MCF-7	breast:
6	chr17:41380186..41382311-chr5:96695804..96697321,3	MCF-7	breast:
7	chr17:41398860..41401971-chr5:96695801..96698802,6	K562	blood:
8	chr17:41380182..41383606-chr5:96695801..96698822,3	K562	blood:
9	chr17:41380182..41383629-chr5:96695802..96698822,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000188825	Chromatin interaction
ENSG00000236383	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10044469	0.92[ASN][1000 genomes]
rs10053393	0.81[EUR][1000 genomes]
rs10055987	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10060043	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10063725	0.91[ASN][1000 genomes]
rs10064451	0.81[EUR][1000 genomes]
rs10073997	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10074671	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10077749	0.90[ASN][1000 genomes]
rs10213758	0.81[EUR][1000 genomes]
rs11135497	0.81[EUR][1000 genomes]
rs11135509	0.83[ASN][1000 genomes]
rs11135510	0.92[ASN][1000 genomes]
rs11135512	0.90[ASN][1000 genomes]
rs1113563	0.91[ASN][1000 genomes]
rs11744867	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747458	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11953479	0.81[EUR][1000 genomes]
rs11953483	0.80[EUR][1000 genomes]
rs12332590	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12521282	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652541	0.83[EUR][1000 genomes]
rs12657539	0.81[EUR][1000 genomes]
rs13167465	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13186882	0.93[ASN][1000 genomes]
rs13357559	0.94[ASN][1000 genomes]
rs13436264	0.85[EUR][1000 genomes]
rs17087524	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17087528	0.86[EUR][1000 genomes]
rs1830367	0.81[EUR][1000 genomes]
rs188344	0.90[ASN][1000 genomes]
rs2132225	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2220200	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28842623	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs291819	0.80[ASN][1000 genomes]
rs4242236	0.97[ASN][1000 genomes]
rs4362964	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395658	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4607369	0.97[ASN][1000 genomes]
rs56050592	0.93[ASN][1000 genomes]
rs6556978	0.94[ASN][1000 genomes]
rs6859739	0.97[ASN][1000 genomes]
rs6865811	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6871255	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6885295	0.90[ASN][1000 genomes]
rs6891107	0.97[ASN][1000 genomes]
rs6891837	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6893895	0.97[ASN][1000 genomes]
rs6895915	0.97[ASN][1000 genomes]
rs6898761	0.97[ASN][1000 genomes]
rs72779902	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72781909	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7718035	0.92[ASN][1000 genomes]
rs7721830	0.93[ASN][1000 genomes]
rs7721857	0.93[ASN][1000 genomes]
rs7733541	0.81[EUR][1000 genomes]
rs9314203	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv882394	chr5:96538585-97108559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1032548	chr5:96565121-97046804	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv537813	chr5:96565121-97046804	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv830415	chr5:96597763-96764157	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv598964	chr5:96612401-96705762	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1025654	chr5:96613448-96817528	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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