Variant report
Variant | rs10213758 |
---|---|
Chromosome Location | chr5:96643974-96643975 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10041189 | 0.81[EUR][1000 genomes] |
rs10053393 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10064451 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10072234 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10155565 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1018058 | 0.81[ASN][1000 genomes] |
rs11135496 | 0.82[EUR][1000 genomes] |
rs11135497 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11744867 | 0.81[EUR][1000 genomes] |
rs11746308 | 0.82[ASN][1000 genomes] |
rs11953479 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11953483 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12332590 | 0.81[EUR][1000 genomes] |
rs12652541 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12657539 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13167465 | 0.81[EUR][1000 genomes] |
rs1528593 | 0.80[ASN][1000 genomes] |
rs1581662 | 0.82[ASN][1000 genomes] |
rs1830367 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1845649 | 0.81[ASN][1000 genomes] |
rs1845663 | 0.81[ASN][1000 genomes] |
rs2088150 | 0.82[ASN][1000 genomes] |
rs2132225 | 0.83[EUR][1000 genomes] |
rs2222767 | 0.80[ASN][1000 genomes] |
rs2463784 | 0.82[ASN][1000 genomes] |
rs2643487 | 0.81[ASN][1000 genomes] |
rs2643490 | 0.81[ASN][1000 genomes] |
rs2643491 | 0.82[ASN][1000 genomes] |
rs2643492 | 0.82[ASN][1000 genomes] |
rs2643493 | 0.81[ASN][1000 genomes] |
rs2643494 | 0.80[ASN][1000 genomes] |
rs2643495 | 0.82[ASN][1000 genomes] |
rs2643497 | 0.81[ASN][1000 genomes] |
rs2643500 | 0.82[ASN][1000 genomes] |
rs2697569 | 0.81[ASN][1000 genomes] |
rs2697570 | 0.81[ASN][1000 genomes] |
rs2697575 | 0.81[ASN][1000 genomes] |
rs2697576 | 0.81[ASN][1000 genomes] |
rs2697577 | 0.81[ASN][1000 genomes] |
rs2697578 | 0.80[ASN][1000 genomes] |
rs2697580 | 0.80[ASN][1000 genomes] |
rs2697581 | 0.80[ASN][1000 genomes] |
rs2697582 | 0.80[ASN][1000 genomes] |
rs2697599 | 0.82[ASN][1000 genomes] |
rs2697600 | 0.81[ASN][1000 genomes] |
rs2697601 | 0.82[ASN][1000 genomes] |
rs2697602 | 0.82[ASN][1000 genomes] |
rs2697603 | 0.82[ASN][1000 genomes] |
rs2697610 | 0.80[ASN][1000 genomes] |
rs2697611 | 0.82[ASN][1000 genomes] |
rs28759693 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3108531 | 0.82[ASN][1000 genomes] |
rs3108532 | 0.82[ASN][1000 genomes] |
rs36154380 | 0.82[ASN][1000 genomes] |
rs4362964 | 0.81[EUR][1000 genomes] |
rs4395658 | 0.81[EUR][1000 genomes] |
rs721801 | 0.82[ASN][1000 genomes] |
rs7716475 | 0.88[ASN][1000 genomes] |
rs7733541 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv432755 | chr5:95987984-96657483 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
2 | nsv598962 | chr5:96057891-96893164 | Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
3 | nsv1019790 | chr5:96471680-96980633 | Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
4 | nsv537812 | chr5:96471680-96980633 | ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
5 | nsv534326 | chr5:96531217-97283481 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
6 | nsv882394 | chr5:96538585-97108559 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
7 | nsv1032548 | chr5:96565121-97046804 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
8 | nsv537813 | chr5:96565121-97046804 | Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
9 | nsv830415 | chr5:96597763-96764157 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
10 | nsv598964 | chr5:96612401-96705762 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
11 | nsv1025654 | chr5:96613448-96817528 | ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:96641200-96645400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |