Variant report

Variant	rs1845663
Chromosome Location	chr5:96608376-96608377
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10040634	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10044182	0.81[CHB][hapmap]
rs10045981	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10054131	0.93[EUR][1000 genomes]
rs10055532	0.86[EUR][1000 genomes]
rs10057166	0.86[EUR][1000 genomes]
rs10069145	0.94[EUR][1000 genomes]
rs10072234	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10075312	0.88[EUR][1000 genomes]
rs10213758	0.81[ASN][1000 genomes]
rs10476700	0.87[EUR][1000 genomes]
rs10515256	0.86[CHB][hapmap]
rs11135494	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs11135495	0.89[EUR][1000 genomes]
rs11135497	0.81[ASN][1000 genomes]
rs12055294	0.91[EUR][1000 genomes]
rs12516613	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs12519482	0.87[EUR][1000 genomes]
rs12657539	0.81[ASN][1000 genomes]
rs12657849	0.86[EUR][1000 genomes]
rs13171520	0.86[CHB][hapmap]
rs1423501	0.85[CHB][hapmap]
rs1423503	0.84[JPT][hapmap]
rs17630601	0.85[CHB][hapmap]
rs1830367	0.81[ASN][1000 genomes]
rs1845652	0.80[JPT][hapmap]
rs2081141	0.91[EUR][1000 genomes]
rs2544777	0.87[EUR][1000 genomes]
rs2548418	0.87[EUR][1000 genomes]
rs2548426	0.81[ASN][1000 genomes]
rs2548427	0.80[ASN][1000 genomes]
rs2643567	0.81[ASN][1000 genomes]
rs4869151	0.81[CHB][hapmap]
rs4869324	0.81[CHB][hapmap]
rs61264046	0.89[EUR][1000 genomes]
rs62377144	0.89[EUR][1000 genomes]
rs7705103	0.92[EUR][1000 genomes]
rs7709067	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7716475	0.84[EUR][1000 genomes]
rs7730273	0.92[EUR][1000 genomes]
rs9314191	0.89[EUR][1000 genomes]
rs9314196	0.92[EUR][1000 genomes]
rs9918187	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1019790	chr5:96471680-96980633	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv537812	chr5:96471680-96980633	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv534326	chr5:96531217-97283481	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv882394	chr5:96538585-97108559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1032548	chr5:96565121-97046804	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv537813	chr5:96565121-97046804	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv830415	chr5:96597763-96764157	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96607800-96609200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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