Variant report
| Variant | rs1004348 |
|---|---|
| Chromosome Location | chr4:82234097-82234098 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10001235 | 0.91[EUR][1000 genomes] |
| rs10488933 | 0.91[EUR][1000 genomes] |
| rs10516652 | 0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10857208 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11099469 | 0.90[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12500847 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12504458 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12505180 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13435795 | 0.91[EUR][1000 genomes] |
| rs13435874 | 0.91[EUR][1000 genomes] |
| rs1452373 | 0.85[EUR][1000 genomes] |
| rs1452375 | 0.91[EUR][1000 genomes] |
| rs17614917 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34388781 | 0.91[EUR][1000 genomes] |
| rs4101929 | 0.91[EUR][1000 genomes] |
| rs4277772 | 0.91[EUR][1000 genomes] |
| rs4694016 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61549332 | 0.91[EUR][1000 genomes] |
| rs72882567 | 0.91[EUR][1000 genomes] |
| rs72882569 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999729 | chr4:81802554-82627820 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv537156 | chr4:81802554-82627820 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv829985 | chr4:82199328-82353656 | Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:82233800-82234800 | Weak transcription | Pancreas | Pancrea |
