Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10001235	0.91[EUR][1000 genomes]
rs1004348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488933	0.91[EUR][1000 genomes]
rs10516652	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10857208	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099469	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12500847	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12504458	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12505180	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13435795	0.91[EUR][1000 genomes]
rs13435874	0.91[EUR][1000 genomes]
rs1452373	0.85[EUR][1000 genomes]
rs1452375	0.91[EUR][1000 genomes]
rs17614917	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34388781	0.91[EUR][1000 genomes]
rs4101929	0.91[EUR][1000 genomes]
rs4277772	0.91[EUR][1000 genomes]
rs61549332	0.91[EUR][1000 genomes]
rs72882567	0.91[EUR][1000 genomes]
rs72882569	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82234800-82237600	Enhancers	Fetal Intestine Large	intestine
2	chr4:82236200-82238000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:82236400-82239000	Weak transcription	Fetal Lung	lung
4	chr4:82236400-82240600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:82236400-82240600	Weak transcription	Pancreas	Pancrea
6	chr4:82236400-82241000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:82236400-82242600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:82236600-82240600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:82236600-82240800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:82236800-82237600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:82236800-82237600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:82236800-82237600	Enhancers	NHDF-Ad	bronchial
13	chr4:82236800-82240600	Weak transcription	Stomach Mucosa	stomach
14	chr4:82237200-82240400	Weak transcription	Fetal Intestine Small	intestine
15	chr4:82237400-82238000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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