Variant report

Variant	rs10043600
Chromosome Location	chr5:107795557-107795558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10038570	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10043553	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10052160	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10055785	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10057274	0.88[JPT][hapmap]
rs10060304	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10070565	0.88[JPT][hapmap]
rs10477889	0.94[JPT][hapmap]
rs12519902	0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12521975	0.88[JPT][hapmap]
rs13174270	0.88[JPT][hapmap]
rs1421971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3756573	0.88[JPT][hapmap]
rs4385196	0.88[JPT][hapmap]
rs4957750	0.88[JPT][hapmap]
rs4957757	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4957759	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870393	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv14828	chr5:107794869-107795891	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107795200-107795800	Enhancers	Fetal Lung	lung
2	chr5:107795200-107796000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:107795200-107796000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:107795400-107795600	Enhancers	HSMMtube	muscle
5	chr5:107795400-107795800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:107795400-107795800	Active TSS	Brain Angular Gyrus	brain
7	chr5:107795400-107796200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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