Variant report

Variant	rs10055785
Chromosome Location	chr5:107745315-107745316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107715395..107721337-chr5:107744476..107755519,20	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145743	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10043553	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10043600	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10052160	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10056658	0.81[ASN][1000 genomes]
rs10057274	0.88[JPT][hapmap];0.91[YRI][hapmap]
rs10060304	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10070565	0.88[JPT][hapmap];0.91[YRI][hapmap]
rs10072616	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10477889	0.94[JPT][hapmap];0.91[YRI][hapmap]
rs10477894	0.81[ASN][1000 genomes]
rs11747188	0.81[YRI][hapmap]
rs12519902	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12521975	0.88[JPT][hapmap];0.90[YRI][hapmap]
rs13174270	0.88[JPT][hapmap];0.91[YRI][hapmap]
rs1421971	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28584643	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28868900	0.81[ASN][1000 genomes]
rs2922434	0.82[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap]
rs2966805	0.90[YRI][hapmap]
rs3756573	0.88[JPT][hapmap]
rs4385196	0.82[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap]
rs4957750	0.88[JPT][hapmap];0.91[YRI][hapmap]
rs4957757	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4957759	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6870393	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv968111	chr5:107743066-107755991	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107735000-107745800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:107745200-107745400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:107745200-107745400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:107745200-107745600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:107745200-107746000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:107745200-107746800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:107745200-107747600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:107745200-107747800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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