Variant report

Variant	rs10044465
Chromosome Location	chr5:164930971-164930972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10050643	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17338964	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55633382	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9314071	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10044465	PANK3	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164930000-164931000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:164930200-164931200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:164930200-164931200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:164930200-164932200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:164930400-164931000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:164930400-164931000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:164930600-164931000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr5:164930600-164931000	Enhancers	Fetal Lung	lung
9	chr5:164930600-164931600	Enhancers	Colon Smooth Muscle	Colon
10	chr5:164930600-164932000	Enhancers	Fetal Brain Male	brain
11	chr5:164930800-164931200	Enhancers	Fetal Brain Female	brain
12	chr5:164930800-164932400	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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