Variant report

Variant	rs55633382
Chromosome Location	chr5:164923413-164923414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10044465	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10050643	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17338964	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164922600-164923600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:164922600-164923600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:164922600-164923600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:164922600-164925000	Enhancers	Liver	Liver
5	chr5:164922800-164923600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:164922800-164924000	Enhancers	Stomach Mucosa	stomach
7	chr5:164923200-164923600	Flanking Active TSS	Fetal Lung	lung
8	chr5:164923400-164924800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links