Variant report

Variant	rs10044836
Chromosome Location	chr5:147533193-147533194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10036424	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10062731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476890	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12332430	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28459444	0.82[EUR][1000 genomes]
rs35337710	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61646781	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs73795014	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7710833	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147528000-147533200	Weak transcription	Fetal Intestine Small	intestine
2	chr5:147533000-147533400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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