Variant report

Variant	rs61646781
Chromosome Location	chr5:147526893-147526894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10036424	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10044836	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10062731	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10066701	0.81[AMR][1000 genomes]
rs12332430	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28459444	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35337710	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73795014	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7710833	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147524000-147528200	Enhancers	Stomach Mucosa	stomach
2	chr5:147524600-147527800	Enhancers	HepG2	liver
3	chr5:147524600-147528000	Enhancers	Fetal Intestine Small	intestine
4	chr5:147525600-147527800	Enhancers	Liver	Liver
5	chr5:147525600-147529600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:147526000-147527200	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr5:147526000-147527400	Enhancers	Pancreas	Pancrea
8	chr5:147526000-147527800	Enhancers	Fetal Intestine Large	intestine
9	chr5:147526000-147530000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:147526200-147527200	Enhancers	Gastric	stomach
11	chr5:147526200-147527800	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr5:147526600-147531200	Weak transcription	HUVEC	blood vessel
13	chr5:147526800-147527200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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