Variant report

Variant	rs10044981
Chromosome Location	chr5:57998318-57998319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10042009	1.00[YRI][hapmap]
rs10053212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055378	0.84[AFR][1000 genomes]
rs10055388	0.82[AFR][1000 genomes]
rs10061405	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070407	1.00[YRI][hapmap]
rs10078211	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12152774	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12153291	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs13356606	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436622	0.87[AFR][1000 genomes]
rs28588077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59567790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877247	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6892734	1.00[YRI][hapmap]
rs753219	0.87[AFR][1000 genomes]
rs753220	0.87[AFR][1000 genomes]
rs9292172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57995800-57999200	Weak transcription	Liver	Liver
2	chr5:57995800-58002800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:57997800-58012200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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