Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10042009	1.00[YRI][hapmap]
rs10044981	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10055378	0.84[AFR][1000 genomes]
rs10055388	0.82[AFR][1000 genomes]
rs10061405	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070407	1.00[YRI][hapmap]
rs10078211	0.97[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10472071	0.91[MKK][hapmap]
rs12152774	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12153291	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs13436622	0.87[AFR][1000 genomes]
rs16888306	1.00[MEX][hapmap]
rs16888496	0.88[MKK][hapmap]
rs28588077	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59567790	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877247	0.97[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6892734	0.80[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs753219	0.87[AFR][1000 genomes]
rs753220	0.87[AFR][1000 genomes]
rs9292172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292175	0.81[ASW][hapmap];0.97[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57995800-58002800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:57997800-58012200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:58000000-58001800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:58000200-58002400	Weak transcription	Fetal Lung	lung

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