Variant report

Variant	rs9292175
Chromosome Location	chr5:58012601-58012602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10078211	0.84[MKK][hapmap]
rs10472071	1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs13356606	0.81[ASW][hapmap];0.97[MKK][hapmap]
rs13359889	0.87[AMR][1000 genomes]
rs16888496	1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs58932912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877247	0.84[MKK][hapmap]
rs6892734	0.97[MKK][hapmap]
rs73102329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732433	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58001800-58013000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:58012000-58013200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:58012000-58013200	Enhancers	Liver	Liver
4	chr5:58012200-58014200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:58012400-58013200	Enhancers	Fetal Lung	lung
6	chr5:58012400-58014000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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