Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:107721996-107722346	HepG2	liver:	n/a	chr5:107722051-107722062
2	JUND	chr5:107722054-107722366	HepG2	liver:	n/a	chr5:107722107-107722119
3	JUN	chr5:107722117-107722387	HepG2	liver:	n/a	n/a
4	ARID3A	chr5:107722046-107722745	HepG2	liver:	n/a	n/a
5	HNF4A	chr5:107722063-107722326	HepG2	liver:	n/a	chr5:107722237-107722252 chr5:107722237-107722251 chr5:107722238-107722250 chr5:107722237-107722252 chr5:107722237-107722250 chr5:107722235-107722253 chr5:107722238-107722250 chr5:107722238-107722251 chr5:107722237-107722252 chr5:107722238-107722250 chr5:107722237-107722251
6	FOXA1	chr5:107722100-107722356	HepG2	liver:	n/a	n/a
7	HNF4A	chr5:107722087-107722420	HepG2	liver:	n/a	chr5:107722237-107722252 chr5:107722237-107722251 chr5:107722238-107722250 chr5:107722237-107722252 chr5:107722237-107722250 chr5:107722235-107722253 chr5:107722238-107722250 chr5:107722238-107722251 chr5:107722237-107722252 chr5:107722238-107722250 chr5:107722237-107722251
8	CEBPB	chr5:107721914-107722379	IMR90	lung:	n/a	chr5:107722051-107722062
9	POLR2A	chr5:107721675-107722494	MCF10A-Er-Src	breast:	n/a	n/a
10	FOXA1	chr5:107722083-107722317	HepG2	liver:	n/a	n/a
11	RFX5	chr5:107722114-107722314	HepG2	liver:	n/a	n/a
12	POLR2A	chr5:107721933-107722251	MCF10A-Er-Src	breast:	n/a	n/a
13	CEBPB	chr5:107722137-107722252	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107721991..107723529-chr5:107734221..107736637,2	MCF-7	breast:
2	chr5:107720815..107723363-chr5:107732371..107733940,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FER-2	chr5:107717801-107724211	NONHSAT103120

Variant related genes	Relation type
FBXL17	TF binding region

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10035966	0.92[EUR][1000 genomes]
rs10054662	0.89[EUR][1000 genomes]
rs10061049	0.89[EUR][1000 genomes]
rs10078397	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10463587	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11240962	0.92[EUR][1000 genomes]
rs11742268	0.91[EUR][1000 genomes]
rs11948261	0.92[EUR][1000 genomes]
rs11949077	0.92[EUR][1000 genomes]
rs11949079	0.92[EUR][1000 genomes]
rs12187433	0.89[EUR][1000 genomes]
rs12656744	0.83[ASN][1000 genomes]
rs13361152	0.92[EUR][1000 genomes]
rs1510967	0.90[EUR][1000 genomes]
rs17161304	0.81[ASN][1000 genomes]
rs17388874	0.88[EUR][1000 genomes]
rs17454114	0.92[EUR][1000 genomes]
rs28572757	0.92[EUR][1000 genomes]
rs4413518	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55672116	0.82[EUR][1000 genomes]
rs59423465	0.96[EUR][1000 genomes]
rs60045633	0.97[EUR][1000 genomes]
rs60896544	0.96[EUR][1000 genomes]
rs62362279	0.90[EUR][1000 genomes]
rs62362281	0.89[EUR][1000 genomes]
rs62362302	0.88[EUR][1000 genomes]
rs6876738	0.94[EUR][1000 genomes]
rs6881232	0.96[EUR][1000 genomes]
rs6895295	0.91[EUR][1000 genomes]
rs7714342	0.91[EUR][1000 genomes]
rs7720469	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7720841	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107718800-107731200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:107719000-107722200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:107719000-107722200	Weak transcription	NHDF-Ad	bronchial
4	chr5:107719000-107722200	Weak transcription	Osteobl	bone
5	chr5:107719000-107723800	Weak transcription	Fetal Brain Female	brain
6	chr5:107719200-107722800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:107719400-107723400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:107721000-107722200	Weak transcription	HSMM	muscle
9	chr5:107721600-107723000	Enhancers	HepG2	liver
10	chr5:107721800-107723600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:107722000-107722400	Enhancers	Muscle Satellite Cultured Cells	--

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