Variant report

Variant	rs17388874
Chromosome Location	chr5:107796853-107796854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10035966	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10040007	1.00[CHB][hapmap]
rs10045002	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10045508	0.88[EUR][1000 genomes]
rs10054662	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057896	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10061049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071499	1.00[CHB][hapmap]
rs10075370	1.00[CHB][hapmap]
rs10078397	0.88[EUR][1000 genomes]
rs10463587	0.88[EUR][1000 genomes]
rs10477896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11240962	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11742268	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11948261	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949077	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11949079	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12187433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361152	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1510967	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17454114	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2076794	1.00[CHB][hapmap]
rs2112303	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28572757	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28752150	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2966788	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2966823	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2966825	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2966829	1.00[CHB][hapmap]
rs2966833	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4413518	0.84[EUR][1000 genomes]
rs57370105	0.92[ASN][1000 genomes]
rs59423465	0.92[EUR][1000 genomes]
rs60045633	0.91[EUR][1000 genomes]
rs60896544	0.92[EUR][1000 genomes]
rs62362279	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62362281	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62362302	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594295	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6863456	1.00[CHB][hapmap]
rs6869057	1.00[CHB][hapmap]
rs6876738	0.89[EUR][1000 genomes]
rs6880727	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs6881232	0.92[EUR][1000 genomes]
rs6881879	1.00[CHB][hapmap]
rs6885988	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6895295	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7714342	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720469	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7720841	0.91[EUR][1000 genomes]
rs7733311	1.00[CHB][hapmap]
rs9326727	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107795800-107797000	Weak transcription	Fetal Lung	lung
2	chr5:107796000-107797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:107796800-107797400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:107796800-107797400	Enhancers	HSMMtube	muscle
5	chr5:107796800-107797800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:107796800-107797800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:107796800-107798000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:107796800-107798000	Enhancers	Hela-S3	cervix
9	chr5:107796800-107798000	Enhancers	NHDF-Ad	bronchial
10	chr5:107796800-107799200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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