Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107716163..107719153-chr5:107784681..107787772,3	MCF-7	breast:
2	chr5:107716591..107718208-chr5:107785765..107787284,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145743	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10035966	0.88[ASN][1000 genomes]
rs10054662	1.00[ASN][1000 genomes]
rs10061049	1.00[ASN][1000 genomes]
rs11240962	0.92[ASN][1000 genomes]
rs11742268	0.92[ASN][1000 genomes]
rs11948261	1.00[ASN][1000 genomes]
rs11949077	0.88[ASN][1000 genomes]
rs11949079	0.88[ASN][1000 genomes]
rs12187433	1.00[ASN][1000 genomes]
rs13361152	0.88[ASN][1000 genomes]
rs1510967	0.88[ASN][1000 genomes]
rs17388874	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17454114	0.92[ASN][1000 genomes]
rs2112303	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28572757	0.92[ASN][1000 genomes]
rs57370105	0.92[ASN][1000 genomes]
rs62362279	0.88[ASN][1000 genomes]
rs62362281	0.92[ASN][1000 genomes]
rs62362302	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895295	0.96[ASN][1000 genomes]
rs7714342	1.00[ASN][1000 genomes]
rs9326727	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: