Variant report

Variant	rs10047449
Chromosome Location	chr11:108845079-108845080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1425796	0.80[ASN][1000 genomes]
rs1895820	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108838600-108856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108839200-108845800	Weak transcription	Psoas Muscle	Psoas
3	chr11:108843600-108845200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:108843600-108845200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:108843800-108845200	Enhancers	HUVEC	blood vessel
6	chr11:108843800-108845200	Enhancers	NHEK	skin
7	chr11:108844200-108849000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:108844400-108845600	Weak transcription	Fetal Heart	heart
9	chr11:108844800-108846800	Enhancers	A549	lung
10	chr11:108844800-108847600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:108844800-108847600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:108844800-108851400	Weak transcription	HSMM	muscle
13	chr11:108845000-108846000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:108845000-108856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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