Variant report

Variant	rs1425796
Chromosome Location	chr11:108855657-108855658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10047449	0.80[ASN][1000 genomes]
rs10437677	0.81[ASN][1000 genomes]
rs11600003	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1895820	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4753855	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57748924	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61912833	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108838600-108856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:108845000-108856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:108853800-108857400	Enhancers	Osteobl	bone
4	chr11:108854200-108856000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:108854400-108857800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:108854800-108856600	Enhancers	NH-A	brain
7	chr11:108854800-108857000	Enhancers	Fetal Heart	heart
8	chr11:108854800-108857200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:108855000-108856000	Enhancers	Left Ventricle	heart
10	chr11:108855000-108856000	Enhancers	Right Atrium	heart
11	chr11:108855200-108856400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:108855400-108856000	Enhancers	Stomach Smooth Muscle	stomach
13	chr11:108855400-108856200	Enhancers	Fetal Kidney	kidney
14	chr11:108855400-108856400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:108855400-108857200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:108855400-108857600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:108855400-108857800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:108855600-108855800	Enhancers	Aorta	Aorta
19	chr11:108855600-108856600	Enhancers	HUVEC	blood vessel
20	chr11:108855600-108856800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:108855600-108856800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:108855600-108857000	Enhancers	Fetal Muscle Leg	muscle
23	chr11:108855600-108857400	Enhancers	HUES48 Cell Line	embryonic stem cell

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