Variant report

Variant	rs10049581
Chromosome Location	chr4:103192893-103192894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489121	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10489124	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11941736	0.82[CHB][hapmap]
rs13434535	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17032286	0.95[ASN][1000 genomes]
rs17225702	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17226148	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17823175	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28392891	0.84[ASN][1000 genomes]
rs28402744	0.93[AFR][1000 genomes]
rs28454488	0.92[ASN][1000 genomes]
rs28505163	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28665758	0.92[AFR][1000 genomes]
rs57245170	0.94[AFR][1000 genomes]
rs57742487	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59814792	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60857717	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72690426	0.92[ASN][1000 genomes]
rs7662378	1.00[CHB][hapmap]
rs7672806	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008680	chr4:103153709-103206555	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1011868	chr4:103158581-103206555	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999012	chr4:103162076-103206555	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1014733	chr4:103174196-103206240	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002129	chr4:103174196-103206555	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1013313	chr4:103175700-103206555	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1003825	chr4:103179197-103206555	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv998689	chr4:103179788-103206555	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103179200-103202200	Weak transcription	Lung	lung
2	chr4:103179400-103221000	Weak transcription	K562	blood
3	chr4:103180400-103200400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:103181400-103197600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:103181600-103210800	Weak transcription	Liver	Liver
6	chr4:103181800-103230400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:103182000-103255400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:103183400-103210600	Weak transcription	Primary B cells from cord blood	blood
9	chr4:103184000-103196600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:103184200-103220600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:103184600-103200400	Weak transcription	GM12878-XiMat	blood
12	chr4:103184600-103201000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:103186600-103195400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:103186600-103229600	Weak transcription	Pancreas	Pancrea
15	chr4:103186800-103216800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:103187200-103200400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:103187200-103229400	Weak transcription	Fetal Thymus	thymus
18	chr4:103188400-103194000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:103189000-103193000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:103189000-103216800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:103189200-103195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:103189200-103197600	Weak transcription	Primary T cells from cord blood	blood
23	chr4:103189200-103211200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:103189200-103225400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr4:103189400-103218600	Weak transcription	Placenta	Placenta
26	chr4:103189800-103200600	Weak transcription	Dnd41	blood
27	chr4:103189800-103232400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr4:103190800-103195000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:103191600-103194200	Weak transcription	Spleen	Spleen
30	chr4:103192200-103193800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:103192600-103193400	Strong transcription	Hela-S3	cervix
32	chr4:103192600-103194800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:103192800-103206000	Weak transcription	Colonic Mucosa	Colon

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