Variant report

Variant	rs28454488
Chromosome Location	chr4:103138667-103138668
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10049581	0.92[ASN][1000 genomes]
rs10489121	0.87[ASN][1000 genomes]
rs10489124	0.95[ASN][1000 genomes]
rs17032286	0.97[ASN][1000 genomes]
rs17225702	0.95[ASN][1000 genomes]
rs17226148	0.87[ASN][1000 genomes]
rs17823175	0.97[ASN][1000 genomes]
rs28392891	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28505163	0.92[ASN][1000 genomes]
rs57742487	0.92[ASN][1000 genomes]
rs59814792	0.84[ASN][1000 genomes]
rs60857717	0.88[ASN][1000 genomes]
rs72690426	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103132400-103139200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:103137200-103139400	Enhancers	A549	lung
3	chr4:103137800-103139600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:103138200-103139400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:103138200-103139400	Enhancers	Hela-S3	cervix
6	chr4:103138200-103139600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:103138400-103140600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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