Variant report

Variant	rs10051341
Chromosome Location	chr5:127094385-127094386
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127093555..127095381-chr5:127175132..127176761,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10066599	0.85[EUR][1000 genomes]
rs10079426	0.85[EUR][1000 genomes]
rs13188453	0.85[EUR][1000 genomes]
rs1710276	0.81[EUR][1000 genomes]
rs7731022	0.85[EUR][1000 genomes]
rs9327450	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127076000-127094800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:127090000-127095000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:127090200-127097000	Weak transcription	Fetal Lung	lung
4	chr5:127090800-127094600	Weak transcription	Ovary	ovary
5	chr5:127090800-127102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:127092600-127094600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:127092800-127095200	Enhancers	Fetal Intestine Small	intestine
8	chr5:127093400-127094600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:127093400-127094800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:127093400-127095000	Enhancers	Stomach Mucosa	stomach
11	chr5:127093400-127095600	Enhancers	Duodenum Mucosa	Duodenum
12	chr5:127093400-127095600	Enhancers	Fetal Intestine Large	intestine
13	chr5:127093600-127094400	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr5:127093600-127095200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:127093600-127095400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:127093600-127095600	Enhancers	Rectal Smooth Muscle	rectum
17	chr5:127093800-127094400	Weak transcription	Brain Substantia Nigra	brain
18	chr5:127093800-127094400	Enhancers	Colon Smooth Muscle	Colon
19	chr5:127093800-127094600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr5:127093800-127096600	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:127093800-127098000	Weak transcription	Small Intestine	intestine
22	chr5:127093800-127098200	Weak transcription	Psoas Muscle	Psoas
23	chr5:127094000-127094400	Weak transcription	Pancreas	Pancrea
24	chr5:127094000-127095600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:127094000-127096600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:127094000-127098000	Weak transcription	Brain Angular Gyrus	brain
27	chr5:127094000-127101800	Weak transcription	HUVEC	blood vessel

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