Variant report

Variant	rs10079426
Chromosome Location	chr5:127093763-127093764
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:127093555..127095381-chr5:127175132..127176761,2	MCF-7	breast:
2	chr5:127093271..127094086-chr5:127536716..127537662,3	MCF-7	breast:
3	chr5:127093273..127093845-chr5:127536845..127537459,3	MCF-7	breast:
4	chr5:127091586..127093784-chr5:127417574..127419619,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245937	Chromatin interaction
ENSG00000064651	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10051341	0.85[EUR][1000 genomes]
rs10054323	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10066599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10072627	0.82[EUR][1000 genomes]
rs1123820	0.83[EUR][1000 genomes]
rs11743016	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1228885	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13182486	0.92[EUR][1000 genomes]
rs13188453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432640	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1654087	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1710276	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs248719	0.83[EUR][1000 genomes]
rs248723	0.83[EUR][1000 genomes]
rs248725	0.83[EUR][1000 genomes]
rs248728	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs248729	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs248734	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2673762	0.83[EUR][1000 genomes]
rs34347180	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36138701	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36170620	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4835930	0.92[EUR][1000 genomes]
rs7731022	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs790832	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs790833	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs790835	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs813165	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9327450	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127076000-127094800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:127090000-127095000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:127090200-127097000	Weak transcription	Fetal Lung	lung
4	chr5:127090800-127094600	Weak transcription	Ovary	ovary
5	chr5:127090800-127102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:127092600-127094600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:127092800-127095200	Enhancers	Fetal Intestine Small	intestine
8	chr5:127093400-127093800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:127093400-127093800	Enhancers	Brain Hippocampus Middle	brain
10	chr5:127093400-127093800	Enhancers	Psoas Muscle	Psoas
11	chr5:127093400-127093800	Enhancers	Small Intestine	intestine
12	chr5:127093400-127093800	Enhancers	HSMMtube	muscle
13	chr5:127093400-127094000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:127093400-127094000	Enhancers	Brain Angular Gyrus	brain
15	chr5:127093400-127094000	Enhancers	Pancreas	Pancrea
16	chr5:127093400-127094600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:127093400-127094800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:127093400-127095000	Enhancers	Stomach Mucosa	stomach
19	chr5:127093400-127095600	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:127093400-127095600	Enhancers	Fetal Intestine Large	intestine
21	chr5:127093600-127093800	Enhancers	Brain Substantia Nigra	brain
22	chr5:127093600-127093800	Enhancers	Gastric	stomach
23	chr5:127093600-127093800	Enhancers	NHDF-Ad	bronchial
24	chr5:127093600-127094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:127093600-127094000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr5:127093600-127094000	Enhancers	Stomach Smooth Muscle	stomach
27	chr5:127093600-127094000	Enhancers	HSMM	muscle
28	chr5:127093600-127094000	Enhancers	HUVEC	blood vessel
29	chr5:127093600-127094200	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr5:127093600-127094400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr5:127093600-127095200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr5:127093600-127095400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr5:127093600-127095600	Enhancers	Rectal Smooth Muscle	rectum

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