Variant report

Variant	rs11743016
Chromosome Location	chr5:127092087-127092088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:126983791..126986140-chr5:127090604..127092155,2	MCF-7	breast:
2	chr5:127089663..127092388-chr5:127102893..127105245,2	K562	blood:
3	chr5:127091586..127093784-chr5:127417574..127419619,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245937	Chromatin interaction
ENSG00000064651	Chromatin interaction
ENSG00000205279	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10054323	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10066599	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10079426	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13188453	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1432640	0.82[ASN][1000 genomes]
rs1654087	0.80[ASN][1000 genomes]
rs1710276	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34347180	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs36138701	0.83[ASN][1000 genomes]
rs36170620	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7731022	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs813165	0.80[ASN][1000 genomes]
rs9327450	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127076000-127094800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:127090000-127095000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:127090200-127093400	Weak transcription	Fetal Intestine Large	intestine
4	chr5:127090200-127097000	Weak transcription	Fetal Lung	lung
5	chr5:127090400-127093400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:127090400-127093600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:127090600-127093400	Weak transcription	HSMMtube	muscle
8	chr5:127090600-127093600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:127090600-127093600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:127090800-127093200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:127090800-127093400	Weak transcription	Pancreas	Pancrea
12	chr5:127090800-127093400	Weak transcription	Stomach Mucosa	stomach
13	chr5:127090800-127093600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:127090800-127093600	Weak transcription	Gastric	stomach
15	chr5:127090800-127093600	Weak transcription	NH-A	brain
16	chr5:127090800-127094600	Weak transcription	Ovary	ovary
17	chr5:127090800-127102400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:127091000-127093600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:127091800-127092200	Active TSS	Placenta	Placenta
20	chr5:127092000-127092600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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