Variant report

Variant	rs10054323
Chromosome Location	chr5:127078541-127078542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:127078318..127080350-chr5:127080995..127082546,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10066599	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10072627	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10079426	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1123820	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11743016	0.87[JPT][hapmap];0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1228885	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13182486	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs13188453	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1432640	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1654087	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1710276	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2138273	0.80[EUR][1000 genomes]
rs248694	0.92[CEU][hapmap];0.94[CHB][hapmap]
rs248705	0.93[CEU][hapmap];0.94[CHB][hapmap]
rs248707	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[YRI][hapmap]
rs248714	0.83[EUR][1000 genomes]
rs248719	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248723	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs248725	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes]
rs248727	0.92[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs248728	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs248729	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs248734	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2569143	0.83[EUR][1000 genomes]
rs2673751	0.83[EUR][1000 genomes]
rs2673762	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34347180	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36138701	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36170620	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4835930	0.88[EUR][1000 genomes]
rs7731022	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs790832	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs790833	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs790835	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs790837	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap]
rs813165	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9327450	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830480	chr5:126964751-127124522	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127076000-127079200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:127076000-127094800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:127077800-127079200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:127078400-127082600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links