Variant report

Variant	rs10051411
Chromosome Location	chr5:57457000-57457001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10036219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10079220	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs13362318	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4700258	1.00[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:57453000-57457000	Weak transcription	Pancreas	Pancrea
3	chr5:57457000-57457200	ZNF genes & repeats	Pancreas	Pancrea
4	chr5:57457000-57457400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:57457000-57457400	Enhancers	Gastric	stomach
6	chr5:57457000-57457400	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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