Variant report

Variant	rs10079220
Chromosome Location	chr5:57453718-57453719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10036219	0.90[AFR][1000 genomes]
rs10051411	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs10054742	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28401535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4700258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753377	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753396	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10079220	FOS	trans	brain	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:57451000-57454000	Enhancers	Fetal Brain Male	brain
3	chr5:57451000-57454200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:57451400-57453800	Enhancers	HSMM	muscle
5	chr5:57451800-57454000	Enhancers	HSMMtube	muscle
6	chr5:57452400-57454000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:57452400-57454000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr5:57452600-57454000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:57453000-57454200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:57453000-57457000	Weak transcription	Pancreas	Pancrea
11	chr5:57453400-57453800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:57453400-57454200	Enhancers	Brain Germinal Matrix	brain
13	chr5:57453400-57455600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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