Variant report

Variant	rs10053242
Chromosome Location	chr5:113586770-113586771
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10036437	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10038352	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10038399	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10043845	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10044601	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10044702	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056135	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10061107	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10065369	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10078333	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3935351	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4072690	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235755	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235758	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4235759	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4270685	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4272125	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4288107	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4299732	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4308475	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4314390	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4360033	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4376257	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4440350	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4451040	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4460131	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4484414	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4484416	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4484417	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4505939	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4521461	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4535442	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4537054	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4558978	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4597957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705495	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705643	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4705650	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705651	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5013666	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5022986	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6863368	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6865389	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6880768	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6886349	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6887829	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6887986	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6892162	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7712075	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720634	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7731994	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882727	chr5:113548400-113602162	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029021	chr5:113551892-113599644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537865	chr5:113551892-113599644	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113584600-113587200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:113585600-113587000	Enhancers	Fetal Heart	heart
3	chr5:113586000-113587000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:113586200-113588200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:113586600-113590800	Weak transcription	Fetal Stomach	stomach

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