Variant report

Variant	rs7720634
Chromosome Location	chr5:113581386-113581387
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10036437	0.84[AFR][1000 genomes]
rs10038352	0.82[ASN][1000 genomes]
rs10038399	0.82[ASN][1000 genomes]
rs10043845	0.82[ASN][1000 genomes]
rs10044601	0.84[AFR][1000 genomes]
rs10044702	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10053242	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10056135	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10061107	0.82[ASN][1000 genomes]
rs10065369	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10078333	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4235758	0.82[EUR][1000 genomes]
rs4235759	0.82[EUR][1000 genomes]
rs4270685	0.82[ASN][1000 genomes]
rs4272125	0.82[ASN][1000 genomes]
rs4299732	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4308475	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4314390	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4360033	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4376257	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4440350	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4484416	0.82[ASN][1000 genomes]
rs4484417	0.82[EUR][1000 genomes]
rs4505939	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4597957	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705495	0.85[EUR][1000 genomes]
rs4705643	0.82[ASN][1000 genomes]
rs4705650	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705651	0.85[EUR][1000 genomes]
rs5022986	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6865389	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6880768	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6886349	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6887829	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6887986	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7712075	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7731994	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882727	chr5:113548400-113602162	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029021	chr5:113551892-113599644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537865	chr5:113551892-113599644	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113579400-113581400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:113579400-113585600	Weak transcription	Fetal Heart	heart
3	chr5:113580000-113581600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:113580600-113581400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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