Variant report

Variant	rs10054161
Chromosome Location	chr5:94983163-94983164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr5:94982146-94983239	Hela-S3	cervix:	n/a	chr5:94982415-94982426 chr5:94982619-94982635
2	POLR2A	chr5:94982831-94983253	GM12891	blood:	n/a	n/a
3	SP1	chr5:94982125-94983249	A549	lung:	n/a	chr5:94982434-94982443 chr5:94982435-94982444 chr5:94982544-94982556 chr5:94982398-94982410 chr5:94982434-94982443 chr5:94982433-94982445 chr5:94982400-94982409 chr5:94982433-94982445 chr5:94982434-94982444 chr5:94982546-94982555 chr5:94982545-94982554 chr5:94982399-94982408 chr5:94982544-94982556 chr5:94982398-94982410 chr5:94982434-94982444
4	GATA2	chr5:94981989-94983295	SH-SY5Y	brain:	n/a	n/a
5	POLR2A	chr5:94982155-94986478	PBDE	blood:	n/a	n/a
6	MAX	chr5:94982029-94983319	A549	lung:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
7	POLR2A	chr5:94982155-94983736	GM12891	blood:	n/a	n/a
8	POLR2A	chr5:94982451-94983199	GM12891	blood:	n/a	n/a
9	MAX	chr5:94982138-94983177	ECC-1	luminal epithelium:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
10	POLR2A	chr5:94982163-94983281	Hela-S3	cervix:	n/a	n/a
11	RUNX3	chr5:94982329-94983260	GM12878	blood:	n/a	n/a
12	POLR2A	chr5:94982276-94983300	MCF-7	breast:	n/a	n/a
13	MYC	chr5:94982168-94983253	NB4	blood:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
14	TEAD4	chr5:94982088-94983239	K562	blood:	n/a	n/a
15	PML	chr5:94982350-94984608	K562	blood:	n/a	n/a
16	MAZ	chr5:94982228-94983243	K562	blood:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
17	POLR2A	chr5:94982057-94983376	PANC-1	pancreas:	n/a	n/a
18	NR2F2	chr5:94982228-94983198	K562	blood:	n/a	n/a
19	CHD2	chr5:94982955-94983258	K562	blood:	n/a	n/a
20	NR3C1	chr5:94982211-94983237	A549	lung:	n/a	chr5:94982528-94982535
21	SIN3AK20	chr5:94981901-94983194	MCF-7	breast:	n/a	n/a
22	POLR2A	chr5:94982275-94983314	GM12878	blood:	n/a	n/a
23	STAT3	chr5:94982788-94983213	MCF10A-Er-Src	breast:	n/a	chr5:94982981-94982989
24	POLR2A	chr5:94982227-94984706	K562	blood:	n/a	n/a
25	MYC	chr5:94982321-94983613	MCF10A-Er-Src	breast:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
26	HEY1	chr5:94982364-94983372	K562	blood:	n/a	chr5:94982613-94982628 chr5:94982615-94982630 chr5:94982616-94982631 chr5:94982537-94982552
27	POLR2A	chr5:94982270-94983237	ProgFib	skin:	n/a	n/a
28	POLR2A	chr5:94982243-94983331	HepG2	liver:	n/a	n/a
29	POLR2A	chr5:94982273-94984717	K562	blood:	n/a	n/a
30	POLR2A	chr5:94982138-94983843	NB4	blood:	n/a	n/a
31	RELA	chr5:94982199-94983237	GM15510	blood:	n/a	n/a
32	POLR2A	chr5:94982129-94983292	H1-hESC	embryonic stem cell:	n/a	n/a
33	MAX	chr5:94982149-94983204	Hela-S3	cervix:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
34	UBTF	chr5:94982140-94983290	K562	blood:	n/a	n/a
35	POLR2A	chr5:94982236-94983244	K562	blood:	n/a	n/a
36	BACH1	chr5:94983079-94983271	K562	blood:	n/a	n/a
37	POLR2A	chr5:94983159-94983176	A549	lung:	n/a	n/a
38	POLR2A	chr5:94982109-94983230	PANC-1	pancreas:	n/a	n/a
39	BCL3	chr5:94982469-94983201	A549	lung:	n/a	chr5:94982617-94982630 chr5:94982576-94982589 chr5:94982849-94982862 chr5:94982616-94982629
40	HEY1	chr5:94982343-94983389	K562	blood:	n/a	chr5:94982613-94982628 chr5:94982615-94982630 chr5:94982616-94982631 chr5:94982537-94982552
41	MYC	chr5:94982162-94984612	K562	blood:	n/a	chr5:94982920-94982927 chr5:94984173-94984182 chr5:94982919-94982928 chr5:94984172-94984187 chr5:94984174-94984181 chr5:94984172-94984182 chr5:94984173-94984184 chr5:94982918-94982928
42	MAX	chr5:94982036-94983225	K562	blood:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
43	RUNX3	chr5:94982202-94983247	GM12878	blood:	n/a	n/a
44	HA-E2F1	chr5:94981844-94983270	MCF-7	breast:	n/a	chr5:94982435-94982444 chr5:94982545-94982554 chr5:94982226-94982235 chr5:94982399-94982408
45	MTA3	chr5:94982073-94983213	GM12878	blood:	n/a	n/a
46	MYC	chr5:94982149-94983256	K562	blood:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
47	KAP1	chr5:94982231-94983219	U2OS	brain:	n/a	n/a
48	MYC	chr5:94982126-94983285	A549	lung:	n/a	chr5:94982920-94982927 chr5:94982919-94982928 chr5:94982918-94982928
49	CTCF	chr5:94982132-94983256	K562	blood:	n/a	chr5:94982539-94982552
50	TFAP2C	chr5:94982225-94983166	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:94982383..94984588-chr5:95046353..95049787,5	MCF-7	breast:
2	chr5:94981556..94984192-chr5:95101303..95104225,2	MCF-7	breast:
3	chr5:94981368..94988467-chr5:95046173..95051252,17	K562	blood:
4	chr5:94977116..95012475-chr5:95055682..95079552,215	K562	blood:
5	chr5:94982379..94987076-chr5:95045372..95049493,6	K562	blood:
6	chr5:94980512..95018354-chr5:95057997..95080764,228	K562	blood:
7	chr5:94979988..94984168-chr5:95032454..95035928,4	MCF-7	breast:
8	chr5:94888891..94893786-chr5:94981389..94987516,11	K562	blood:
9	chr5:94980020..94983633-chr5:95104411..95107623,3	K562	blood:
10	chr5:94980861..94985410-chr5:95067178..95071099,5	MCF-7	breast:
11	chr5:94889492..94895025-chr5:94981557..94985063,8	K562	blood:
12	chr5:90676216..90679010-chr5:94981409..94984145,2	K562	blood:
13	chr5:94979878..94983810-chr5:95295717..95298674,4	K562	blood:
14	chr5:94979432..94984462-chr5:95062276..95069972,15	MCF-7	breast:
15	chr5:94981340..94984731-chr5:95103817..95108133,4	K562	blood:
16	chr5:94953878..94956024-chr5:94981084..94983825,2	K562	blood:
17	chr5:94981287..94984175-chr5:95296229..95298674,3	K562	blood:
18	chr5:94981172..94985318-chr5:95169805..95176246,5	MCF-7	breast:

Variant related genes	Relation type
RFESD	TF binding region
ENSG00000164292	Chromatin interaction
ENSG00000251314	Chromatin interaction
ENSG00000164291	Chromatin interaction
ENSG00000198677	Chromatin interaction
ENSG00000113369	Chromatin interaction
ENSG00000251348	Chromatin interaction
ENSG00000118985	Chromatin interaction
ENSG00000251000	Chromatin interaction
ENSG00000178015	Chromatin interaction
ENSG00000145757	Chromatin interaction
ENSG00000250240	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6887595	1.00[CEU][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv598960	chr5:94975592-94988482	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94982000-94983200	Active TSS	Fetal Brain Female	brain
2	chr5:94982000-94983600	Active TSS	A549	lung
3	chr5:94982200-94983200	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:94982200-94983200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:94982200-94983200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr5:94982200-94983200	Flanking Active TSS	Liver	Liver
7	chr5:94982200-94983200	Active TSS	Brain Angular Gyrus	brain
8	chr5:94982200-94983200	Flanking Active TSS	Placenta	Placenta
9	chr5:94982200-94983200	Active TSS	Ovary	ovary
10	chr5:94982200-94983200	Active TSS	Stomach Mucosa	stomach
11	chr5:94982200-94983400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:94982200-94983400	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr5:94982200-94983400	Active TSS	Fetal Kidney	kidney
14	chr5:94982200-94983400	Active TSS	Fetal Stomach	stomach
15	chr5:94982200-94983400	Active TSS	Right Atrium	heart
16	chr5:94982200-94983400	Active TSS	Thymus	Thymus
17	chr5:94982200-94983400	Flanking Active TSS	HMEC	breast
18	chr5:94982200-94983800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:94982400-94983200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:94982400-94983200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:94982400-94983200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:94982400-94983200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:94982400-94983200	Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr5:94982400-94983200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:94982400-94983200	Active TSS	Esophagus	oesophagus
26	chr5:94982400-94986000	Active TSS	K562	blood
27	chr5:94982600-94983200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr5:94982600-94983200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:94982600-94983200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr5:94982600-94983200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr5:94982600-94983200	Active TSS	Aorta	Aorta
32	chr5:94982600-94983200	Flanking Active TSS	Fetal Muscle Trunk	muscle
33	chr5:94982600-94983200	Flanking Active TSS	HepG2	liver
34	chr5:94982600-94983200	Flanking Active TSS	NH-A	brain
35	chr5:94982600-94983400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr5:94982600-94983400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr5:94982600-94983400	Active TSS	Colon Smooth Muscle	Colon
38	chr5:94982600-94983400	Flanking Active TSS	Fetal Thymus	thymus
39	chr5:94982600-94983400	Flanking Active TSS	HUVEC	blood vessel
40	chr5:94982600-94983400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr5:94982600-94983600	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr5:94982600-94983600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:94982600-94983600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:94982600-94983600	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr5:94982600-94983600	Active TSS	Placenta Amnion	Placenta Amnion
46	chr5:94982600-94983600	Active TSS	Right Ventricle	heart
47	chr5:94982600-94983800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:94982600-94983800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr5:94982600-94983800	Active TSS	Psoas Muscle	Psoas
50	chr5:94982600-94984200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links