Variant report

Variant	rs6887595
Chromosome Location	chr5:94968108-94968109
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:94966845..94971846-chr5:95064357..95069184,6	K562	blood:
2	chr5:94949076..94951830-chr5:94968057..94971746,3	K562	blood:
3	chr5:94886893..94893129-chr5:94964551..94970811,6	K562	blood:
4	chr5:94967847..94971625-chr5:94973983..94977382,3	K562	blood:
5	chr5:94966247..94968273-chr5:94969392..94971548,2	MCF-7	breast:
6	chr5:94889263..94893129-chr5:94966214..94970811,5	K562	blood:
7	chr5:94965737..94968208-chr5:94982520..94985192,3	K562	blood:
8	chr5:94959437..94960992-chr5:94968032..94970873,2	K562	blood:
9	chr5:94965792..94968676-chr5:94971451..94974340,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164291	Chromatin interaction
ENSG00000198677	Chromatin interaction
ENSG00000250240	Chromatin interaction
ENSG00000175449	Chromatin interaction
ENSG00000164292	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10054161	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs10073572	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10078513	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10476658	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12654759	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658215	0.82[CHB][hapmap];0.81[CHD][hapmap];0.89[EUR][1000 genomes]
rs13166682	0.85[JPT][hapmap]
rs4869245	0.85[JPT][hapmap]
rs6865873	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94966000-94968400	Enhancers	HSMMtube	muscle
2	chr5:94966200-94968400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:94966200-94968400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:94966200-94968400	Enhancers	Fetal Intestine Small	intestine
5	chr5:94966200-94968600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr5:94966400-94968200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:94966400-94968200	Enhancers	NHLF	lung
8	chr5:94966400-94968400	Enhancers	NHDF-Ad	bronchial
9	chr5:94966600-94968200	Enhancers	HMEC	breast
10	chr5:94966600-94968400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:94966600-94968400	Enhancers	HUVEC	blood vessel
12	chr5:94966800-94968200	Enhancers	Primary T cells from cord blood	blood
13	chr5:94966800-94968200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:94966800-94968200	Enhancers	NH-A	brain
15	chr5:94967000-94968200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:94967000-94968400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr5:94967000-94968600	ZNF genes & repeats	GM12878-XiMat	blood
18	chr5:94967200-94968200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:94967200-94968200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:94967200-94968200	Enhancers	A549	lung
21	chr5:94967200-94968400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr5:94967200-94968400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:94967200-94968400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:94967200-94968400	Enhancers	Hela-S3	cervix
25	chr5:94967400-94968200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr5:94967400-94968200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr5:94967600-94968200	Enhancers	Primary B cells from peripheral blood	blood
28	chr5:94967600-94968200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr5:94967600-94968200	Enhancers	Dnd41	blood
30	chr5:94967600-94968200	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr5:94967600-94968400	Enhancers	Muscle Satellite Cultured Cells	--
32	chr5:94967600-94968800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr5:94967800-94968200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr5:94967800-94968200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:94967800-94968200	Enhancers	Fetal Thymus	thymus
36	chr5:94967800-94968200	Enhancers	Left Ventricle	heart
37	chr5:94967800-94968200	Enhancers	Right Ventricle	heart
38	chr5:94967800-94968400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:94967800-94968400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:94967800-94968400	Enhancers	Fetal Intestine Large	intestine
41	chr5:94967800-94968400	Enhancers	Gastric	stomach
42	chr5:94967800-94968400	Enhancers	Pancreas	Pancrea
43	chr5:94967800-94968400	Enhancers	HSMM	muscle
44	chr5:94967800-94968400	Enhancers	K562	blood
45	chr5:94968000-94968200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:94968000-94968200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr5:94968000-94968200	Flanking Active TSS	Osteobl	bone
48	chr5:94968000-94968400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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