Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:94981268..94983440-chr5:95027881..95030693,3	K562	blood:
2	chr5:95027058..95030624-chr5:95030669..95034324,6	K562	blood:
3	chr5:95026285..95029198-chr5:95031795..95035380,4	MCF-7	breast:
4	chr5:95026903..95028708-chr5:95067346..95068991,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10073572	0.89[EUR][1000 genomes]
rs10476658	0.89[EUR][1000 genomes]
rs12654759	0.89[EUR][1000 genomes]
rs150548	0.81[JPT][hapmap]
rs150549	0.81[JPT][hapmap]
rs150550	0.85[JPT][hapmap]
rs183327	0.86[ASN][1000 genomes]
rs185313	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs213510	0.81[JPT][hapmap]
rs213512	0.81[JPT][hapmap]
rs213880	0.90[JPT][hapmap]
rs2548121	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2548122	0.85[ASN][1000 genomes]
rs34901	0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs40098	0.86[ASN][1000 genomes]
rs412026	0.81[JPT][hapmap]
rs460697	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs461873	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs462319	0.85[ASN][1000 genomes]
rs462944	0.85[ASN][1000 genomes]
rs6887595	0.82[CHB][hapmap];0.81[CHD][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95009200-95032400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:95015000-95040400	Weak transcription	HSMMtube	muscle
3	chr5:95017600-95039800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:95023000-95032200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:95024200-95031200	Weak transcription	Placenta	Placenta

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