Variant report

Variant	rs460697
Chromosome Location	chr5:95018939-95018940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12658215	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs150548	0.81[JPT][hapmap]
rs150549	0.82[JPT][hapmap]
rs150550	0.85[JPT][hapmap]
rs183327	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185313	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213510	0.82[JPT][hapmap]
rs213512	0.81[JPT][hapmap]
rs213880	0.90[JPT][hapmap]
rs2548121	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2548122	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34901	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs40098	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412026	0.81[JPT][hapmap]
rs461873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs462319	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs462944	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95009200-95032400	Weak transcription	Adipose Nuclei	Adipose
2	chr5:95015000-95040400	Weak transcription	HSMMtube	muscle
3	chr5:95017000-95019600	Weak transcription	K562	blood
4	chr5:95017600-95039800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:95018200-95019000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:95018200-95019200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:95018200-95021400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:95018400-95019000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:95018400-95019000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:95018600-95019000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr5:95018600-95019400	Enhancers	Brain Substantia Nigra	brain
12	chr5:95018800-95019800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:95018800-95019800	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:95018800-95022200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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