Variant report

Variant	rs12654759
Chromosome Location	chr5:94965664-94965665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10073572	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10078513	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10476658	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658215	0.89[EUR][1000 genomes]
rs6887595	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94957800-94967200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:94958200-94967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:94959800-94967800	Weak transcription	Pancreas	Pancrea
4	chr5:94960000-94967000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:94960200-94966000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:94960600-94966200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:94961000-94966400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:94961000-94966600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:94961200-94966200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:94961400-94967400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:94963400-94966400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:94963400-94967200	Enhancers	Fetal Intestine Large	intestine
13	chr5:94964800-94966400	Weak transcription	Small Intestine	intestine
14	chr5:94964800-94967000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:94965400-94966800	Weak transcription	Adipose Nuclei	Adipose
16	chr5:94965600-94966200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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