Variant report

Variant	rs13166682
Chromosome Location	chr5:94975245-94975246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94890034..94891866-chr5:94974819..94976778,2	MCF-7	breast:
2	chr5:94967847..94971625-chr5:94973983..94977382,3	K562	blood:
3	chr5:94893117..94894866-chr5:94974664..94977618,2	K562	blood:
4	chr5:94974397..94976527-chr5:94981927..94983725,2	K562	blood:
5	chr5:94974928..94977008-chr5:95297075..95299326,2	K562	blood:
6	chr5:94970162..94972670-chr5:94973796..94975499,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118985	Chromatin interaction
ENSG00000198677	Chromatin interaction
ENSG00000164291	Chromatin interaction
ENSG00000175449	Chromatin interaction
ENSG00000251314	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10063774	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13172592	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179768	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs150548	0.95[CHB][hapmap];0.91[ASN][1000 genomes]
rs150549	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs150550	0.91[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213507	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213508	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213509	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213510	0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213511	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213512	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213880	0.86[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213887	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213888	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs411817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs412026	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs440342	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs4869245	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6887595	0.85[JPT][hapmap]
rs6890832	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94968200-94979800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:94969600-94976600	Weak transcription	Fetal Intestine Large	intestine
3	chr5:94973200-94975600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:94974800-94979800	Weak transcription	GM12878-XiMat	blood
5	chr5:94975200-94979200	Enhancers	Pancreas	Pancrea

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