Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:94966845..94971846-chr5:95064357..95069184,6	K562	blood:
2	chr5:94949076..94951830-chr5:94968057..94971746,3	K562	blood:
3	chr5:94966247..94968273-chr5:94969392..94971548,2	MCF-7	breast:
4	chr5:94886893..94893129-chr5:94964551..94970811,6	K562	blood:
5	chr5:94967847..94971625-chr5:94973983..94977382,3	K562	blood:
6	chr5:94889263..94893129-chr5:94966214..94970811,5	K562	blood:
7	chr5:94959437..94960992-chr5:94968032..94970873,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10063774	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13166682	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179768	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs150548	0.91[ASN][1000 genomes]
rs150549	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs150550	0.91[ASN][1000 genomes]
rs213507	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213508	0.97[ASN][1000 genomes]
rs213509	0.97[ASN][1000 genomes]
rs213510	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213511	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213512	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs213880	0.91[ASN][1000 genomes]
rs213885	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs213887	0.97[ASN][1000 genomes]
rs213888	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs411817	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs412026	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs440342	0.98[ASN][1000 genomes]
rs4869245	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6865873	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6890832	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94968200-94973200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:94968200-94979800	Weak transcription	Primary T cells from cord blood	blood
3	chr5:94968400-94975200	Weak transcription	Pancreas	Pancrea
4	chr5:94968600-94970000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:94968600-94974000	Weak transcription	GM12878-XiMat	blood
6	chr5:94969200-94970000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr5:94969400-94969600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr5:94969400-94969600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:94969400-94969600	Enhancers	Fetal Intestine Large	intestine
10	chr5:94969400-94969800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr5:94969400-94970000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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