Variant report

Variant	rs213511
Chromosome Location	chr5:94997889-94997890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:94796017..94797723-chr5:94996114..94998277,2	K562	blood:
2	chr5:94977116..95012475-chr5:95055682..95079552,215	K562	blood:
3	chr5:94993071..94995504-chr5:94996171..94997974,2	MCF-7	breast:
4	chr5:94996124..94999069-chr5:95127778..95130487,2	MCF-7	breast:
5	chr5:94997290..94999357-chr5:95174620..95177021,2	K562	blood:
6	chr5:94980512..95018354-chr5:95057997..95080764,228	K562	blood:
7	chr5:94997012..94998802-chr5:95085879..95088404,2	K562	blood:
8	chr5:94997256..95000202-chr5:95046139..95048093,2	MCF-7	breast:
9	chr5:94996681..94999988-chr5:95032743..95035224,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250240	Chromatin interaction
ENSG00000145757	Chromatin interaction
ENSG00000164292	Chromatin interaction
ENSG00000175449	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10063774	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13166682	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13172592	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13179768	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs150548	1.00[ASN][1000 genomes]
rs150549	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs150550	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213507	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213508	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs213509	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs213510	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213880	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213885	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs213887	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs213888	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs411817	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs412026	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs440342	0.93[ASN][1000 genomes]
rs4869245	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6865873	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6890832	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94983200-95005000	Weak transcription	Left Ventricle	heart
2	chr5:94983400-95005000	Weak transcription	Placenta	Placenta
3	chr5:94983600-94999800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr5:94983600-95000000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:94983600-95000000	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:94983600-95000200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:94983600-95005000	Weak transcription	Adipose Nuclei	Adipose
8	chr5:94983800-94999800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94983800-94999800	Weak transcription	Colon Smooth Muscle	Colon
10	chr5:94983800-95000000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:94983800-95004800	Weak transcription	Psoas Muscle	Psoas
12	chr5:94984200-94999800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:94984200-94999800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr5:94984200-95007800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:94984600-94999800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:94989000-95004800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr5:94989200-94999800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:94990400-95000200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:94991600-95002400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:94991600-95005600	Weak transcription	Fetal Lung	lung
21	chr5:94991800-94999800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr5:94992000-95004600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:94992200-94999800	Weak transcription	Primary T cells from cord blood	blood
24	chr5:94994800-94999800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:94995200-94999400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr5:94996000-95000000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:94996200-95000000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links