Variant report

Variant	rs10063774
Chromosome Location	chr5:94977132-94977133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94967847..94971625-chr5:94973983..94977382,3	K562	blood:
2	chr5:94893117..94894866-chr5:94974664..94977618,2	K562	blood:
3	chr5:94977116..95012475-chr5:95055682..95079552,215	K562	blood:

Variant related genes	Relation type
ENSG00000250240	Chromatin interaction
ENSG00000164292	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13166682	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13172592	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13179768	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs150548	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs150549	0.92[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs150550	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213507	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs213508	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213510	0.87[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213511	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213512	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213880	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213885	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213887	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs213888	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs411817	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412026	0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs440342	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869245	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6865873	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890832	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv598960	chr5:94975592-94988482	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10063774	RHOBTB3	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94968200-94979800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:94974800-94979800	Weak transcription	GM12878-XiMat	blood
3	chr5:94975200-94979200	Enhancers	Pancreas	Pancrea
4	chr5:94975600-94977400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:94976000-94982400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:94976600-94977400	Enhancers	HepG2	liver
7	chr5:94976600-94978200	Enhancers	Fetal Intestine Small	intestine
8	chr5:94976600-94978600	Enhancers	Fetal Intestine Large	intestine
9	chr5:94976800-94977400	Weak transcription	Gastric	stomach
10	chr5:94976800-94978200	Enhancers	Stomach Mucosa	stomach
11	chr5:94976800-94978400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr5:94976800-94982200	Enhancers	Liver	Liver
13	chr5:94977000-94977400	Weak transcription	Right Atrium	heart
14	chr5:94977000-94977600	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr5:94977000-94977800	Enhancers	Duodenum Mucosa	Duodenum

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