Variant report
Variant | rs10055063 |
---|---|
Chromosome Location | chr5:80622004-80622005 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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Variant related genes | Relation type |
---|---|
ENSG00000172497 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10038684 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10041063 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10053706 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10066296 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10078279 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10474656 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10514213 | 0.82[EUR][1000 genomes] |
rs1055383 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10942945 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs11950033 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs13362314 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1566432 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2270823 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs28464111 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs28650401 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4703827 | 0.82[EUR][1000 genomes] |
rs4704707 | 0.82[EUR][1000 genomes] |
rs4704708 | 0.82[EUR][1000 genomes] |
rs4704710 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4704712 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4704715 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4704720 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs59132806 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs60488995 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs60904680 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs61244991 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6893467 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs73130869 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs7381116 | 0.81[AMR][1000 genomes] |
rs7720009 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7728465 | 0.80[AMR][1000 genomes] |
rs9293841 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024844 | chr5:79862428-80860430 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs10055063 | CTD-2248H3.1 | cis | Esophagus Muscularis | GTEx |
rs10055063 | CTC-281B15.1 | cis | Nerve Tibial | GTEx |
rs10055063 | CTC-281B15.1 | cis | Artery Aorta | GTEx |
rs10055063 | CTD-2248H3.1 | cis | Adipose Subcutaneous | GTEx |
rs10055063 | CTC-281B15.1 | cis | Esophagus Muscularis | GTEx |
rs10055063 | CTD-2248H3.1 | cis | Thyroid | GTEx |
rs10055063 | CTC-281B15.1 | cis | Stomach | GTEx |
rs10055063 | CTC-281B15.1 | cis | Thyroid | GTEx |
rs10055063 | CTC-281B15.1 | cis | Esophagus Mucosa | GTEx |
rs10055063 | CTC-281B15.1 | cis | Artery Tibial | GTEx |
rs10055063 | CTD-2248H3.1 | cis | lung | GTEx |
rs10055063 | CTC-281B15.1 | cis | lung | GTEx |
rs10055063 | CTD-2248H3.1 | cis | Artery Aorta | GTEx |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:80608600-80623000 | Weak transcription | Psoas Muscle | Psoas |
2 | chr5:80611600-80623600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
3 | chr5:80612200-80623600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
4 | chr5:80619600-80622400 | Weak transcription | Liver | Liver |
5 | chr5:80621800-80622400 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |